scRNA-seq
Updated by Hongjiang on 03/08/2023
Upstream Analysis
Analysis of single cell RNA-seq data - Hemberg Lab
Single cell tutorial - Theis Lab
Cellranger
Cellrangeris an upstream analysis software developed by 10X Genomics.
Downstream Analysis
Seurat
Celltype Annotation
Auto
SingleR + celldex. (Mainly for Human & Mice)
Manually
Below are databases for cell markers:
