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BioManual

Database

BioManual @Github

BioManual

BioManual @Github

Biomanual
Genetics
Genetics
- Optogenetics
- CREs
  CREs
  - Enhancer
  - Promoter
  - Insulator
  - Silencer
  - Database Database
    Table of contents
    
    CATlas
- Epigentics
  Epigentics
  - DNA Modifications
  - RNA Modifications
  - Histone Modifications
    
    Histone Modifications
    
    H2A.Z
    
    H3K26me3
    
    H3K27ac
    
    H3K27me3
    
    H3K4me
    
    H3K4me3
    
    H3K56ac
    
    H3K9me3
- Genome Editing
  Genome Editing
  - CRISPR
  - LSR
- Molecular Cloning
  Molecular Cloning
- Sequencing
  Sequencing
  - RNA-seq
  - scRNA-seq
  - ATAC-seq
  - ChIP-seq
  - Capture Hi-C
  - ChIA-PET
  - MeRIP-Seq
  - mRNA Display
  - Downstream
    Downstream
    
    Normalization
    
    motifbreakR
    
    DESeq2
    
    PCA
    
    Augur
    
    clusterProfiler
    
    edgeR
    
    WGCNA
    
    Alternative Splicing
    
    bcftools
  - GenomeBrowser
    GenomeBrowser
    
    生成bed.gz
    
    生成bigBed
    
    生成bigwig
  - Upstream
    Upstream
    
    Quality Control
HAM
HAM
- Quansheng UV-K6
Neuroscience
Neuroscience
Protocols
Protocols
- GST Pull-down assay
Servers
Servers
- Sequencing Reference
- Sequencing Tools
Tools
Tools
- Conda
- Calibre-web
- PyTorch
- Docker
- ggplot2
- matplotlib
- Pathways
- MD5
- Netdata
- Jellyfin
- ZeroTier
- Linux
  Linux
  - Awk
  - Progress Bar
  - Nvidia
  - Add A User
  - Aria2
  - Nexttrace

Database

Updated by Hongjiang on 09/20/2022

CATlas

Cis-element Atlas.

By Bing Ren Lab, UCSD.

CATlas: Mice snATAC-seq

CATlas: Human snATAC-seq