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BioManual

Quality Control

BioManual @Github

BioManual

BioManual @Github

Biomanual
Genetics
Genetics
- Optogenetics
- > 1.DNA
  > 1.DNA
  - # Biochemistry
    # Biochemistry
    
    1.Electrophoresis
    
    1.Electrophoresis
    
    Standard TAE Gel
    
    TBE Gel
    
    PFGE
    
    PAGE
    
    2.DNA Damage
    2.DNA Damage
    
    Alkaline Comet Assay
  - # DNA Modifications
    
    # DNA Modifications
  - # Imaging
    # Imaging
    
    DNA-FISH
  - # Molecular Cloning
    # Molecular Cloning
    
    Golden Gate Assembly
    
    Gibson Assembly
    
    Restriction Enzymes
  - # Sequencing
    # Sequencing
    
    Sanger Sequencing
    
    Next Generation Sequencing
    
    Long Read Sequencing
  - > 1.Genome
    > 1.Genome
    
    Bioinformation
    Bioinformation
    
    Downstream
    Downstream
    
    Normalization
    
    motifbreakR
    
    DESeq2
    
    PCA
    
    Augur
    
    clusterProfiler
    
    edgeR
    
    WGCNA
    
    Alternative Splicing
    
    bcftools
    
    GenomeBrowser
    GenomeBrowser
    
    生成bed.gz
    
    生成bigBed
    
    生成bigwig
    
    Upstream
    Upstream
    
    Quality Control Quality Control
    Table of contents
    
    fastp
    
    seqkit
    
    Genome Editing
    Genome Editing
    
    CRISPR
    
    LSR
    
    2.Noncoding
    2.Noncoding
    
    1.CREs
    1.CREs
    
    Enhancer
    
    Promoter
    
    Insulator
    
    Silencer
    
    Database
- > 2.RNA
  > 2.RNA
  - # RNA Modifications
    
    # RNA Modifications
    
    RNA m6A
- > 3.Protein
  > 3.Protein
  - # Imaging
    # Imaging
    
    Immunofluorescence
  - > 1.Nucleosome
    > 1.Nucleosome
    
    # Histone Modifications
    
    # Histone Modifications
    
    H3K26me3
    
    H3K27ac
    
    H3K27me3
    
    H3K4me
    
    H3K4me3
    
    H3K56ac
    
    H3K9me3
    
    # Histone Variants
    # Histone Variants
    
    H2A.Z
- Epigentics
  Epigentics
- Sequencing
  Sequencing
  - RNA-seq
  - scRNA-seq
  - ATAC-seq
  - ChIP-seq
  - Capture Hi-C
  - ChIA-PET
  - MeRIP-Seq
  - mRNA Display
HAM
HAM
- Quansheng UV-K6
Neuroscience
Neuroscience
Servers
Servers
- Sequencing Reference
- Sequencing Tools
Tools
Tools
- Conda
- Calibre-web
- PyTorch
- Docker
- ggplot2
- matplotlib
- Pathways
- MD5
- Netdata
- Jellyfin
- ZeroTier
- Linux
  Linux
  - Awk
  - Progress Bar
  - Nvidia
  - Add A User
  - Aria2
  - Nexttrace
  - Bash Setup
  - Server Test

Quality Control

Updated by Hongjiang on 12/19/2022

Quality Control (QC) of sequencing data is vital, below are some tools.

fastp

seqkit